PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC30807_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 115aa    MW: 12900.3 Da    PI: 10.8423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC30807_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.4e-1183110431
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkas 31 
                   hn  ErrRRdriN+++  L+el+P++s
  RrC30807_p1  83 VHNLSERRRRDRINERMKALQELIPHCS 110
                  6*************************83 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1077112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.72279115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-883110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1183111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MNARSKNVEE RLDTSSGGSS GCSKETESGR SVTISRKRKH AMDTDQESMS QSDVRLMSTD  60
DQAMGNKSSQ RSGSTRRSRA AEVHNLSERR RRDRINERMK ALQELIPHCS KVSSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534281e-86AK353428.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-L20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605267.12e-68PREDICTED: transcription factor PIF5
SwissprotQ84LH82e-47PIF5_ARATH; Transcription factor PIF5
TrEMBLA0A0D3DUA32e-68A0A0D3DUA3_BRAOL; Uncharacterized protein
STRINGBra007430.1-P4e-54(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.11e-38phytochrome interacting factor 3-like 6